HL_5LMV_008

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LMV_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1153

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LMV|1|A|C|320
5LMV|1|A|A|321
5LMV|1|A|C|322
5LMV|1|A|U|323
5LMV|1|A|G|324
5LMV|1|A|A|325
5LMV|1|A|G|326
5LMV|1|A|A|327
5LMV|1|A|C|328
5LMV|1|A|A|329
5LMV|1|A|C|330
5LMV|1|A|G|331
5LMV|1|A|G|332
5LMV|1|A|G|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20