5LMV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5LMV_001 | No text annotation | ||
| HL_5LMV_002 | No text annotation | ||
| HL_5LMV_003 | GNRA | ||
| HL_5LMV_004 | No text annotation | ||
| HL_5LMV_005 | No text annotation | ||
| HL_5LMV_036 | Mini UNCG | ||
| HL_5LMV_006 | GNRA related | ||
| HL_5LMV_007 | GNRA | ||
| HL_5LMV_008 | No text annotation | ||
| HL_5LMV_009 | UNCG | ||
| HL_5LMV_010 | GNRA | ||
| HL_5LMV_011 | UNCG | ||
| HL_5LMV_012 | GNRA | ||
| HL_5LMV_013 | No text annotation | ||
| HL_5LMV_014 | GNRA-like with tWH | ||
| HL_5LMV_015 | No text annotation | ||
| HL_5LMV_016 | GNRA | ||
| HL_5LMV_017 | No text annotation | ||
| HL_5LMV_018 | Mini UNCG | ||
| HL_5LMV_019 | GNRA | ||
| HL_5LMV_020 | GNRA | ||
| HL_5LMV_021 | No text annotation | ||
| HL_5LMV_022 | GNRA | ||
| HL_5LMV_023 | No text annotation | ||
| HL_5LMV_024 | GNRA | ||
| HL_5LMV_025 | T-loop related | ||
| HL_5LMV_026 | No text annotation | ||
| HL_5LMV_027 | GNRA | ||
| HL_5LMV_028 | GNRA | ||
| HL_5LMV_029 | T-loop with 3 stacked bulged bases | ||
| HL_5LMV_030 | No text annotation | ||
| HL_5LMV_031 | UNCG | ||
| HL_5LMV_032 | GNRA | ||
| HL_5LMV_033 | tRNA D-loop | ||
| HL_5LMV_034 | tRNA anticodon loop | ||
| HL_5LMV_035 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5LMV_001 | Single bulged G | ||
| IL_5LMV_002 | Single bulged A | ||
| IL_5LMV_003 | No text annotation | ||
| IL_5LMV_004 | Minor groove platform | ||
| IL_5LMV_005 | Multiple bulged bases | ||
| IL_5LMV_006 | Isolated non-canonical cWW pair | ||
| IL_5LMV_007 | Multiple bulged bases | ||
| IL_5LMV_008 | No text annotation | ||
| IL_5LMV_009 | tWH-tWH-tHW-tHW | ||
| IL_5LMV_010 | Isolated non-canonical cWW pair | ||
| IL_5LMV_011 | Kink-turn with non-sequential stacking | ||
| IL_5LMV_012 | No text annotation | ||
| IL_5LMV_060 | No text annotation | ||
| IL_5LMV_013 | C-loop | ||
| IL_5LMV_014 | No text annotation | ||
| IL_5LMV_015 | C-loop | ||
| IL_5LMV_016 | Single bulged G | ||
| IL_5LMV_017 | No text annotation | ||
| IL_5LMV_018 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_5LMV_019 | No text annotation | ||
| IL_5LMV_020 | SSU/LSU pseudoknot | ||
| IL_5LMV_021 | Kink-turn related | ||
| IL_5LMV_022 | tSH-tHW-tHS | ||
| IL_5LMV_023 | Major groove platform | ||
| IL_5LMV_024 | Major groove minor groove platform; mini C-loop | ||
| IL_5LMV_025 | No text annotation | ||
| IL_5LMV_026 | Major groove platform; stack outside cWW | ||
| IL_5LMV_027 | Major groove platform | ||
| IL_5LMV_028 | Tandem non-canonical cWW pairs | ||
| IL_5LMV_029 | No text annotation | ||
| IL_5LMV_030 | Kink-turn | ||
| IL_5LMV_031 | Left turn | ||
| IL_5LMV_032 | tSH-tHW-tHS | ||
| IL_5LMV_033 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5LMV_034 | Single bulged A | ||
| IL_5LMV_035 | Single bulged G | ||
| IL_5LMV_036 | Minor groove platform | ||
| IL_5LMV_037 | Minor groove platform | ||
| IL_5LMV_038 | Single bulged U | ||
| IL_5LMV_039 | Isolated cWS basepair | ||
| IL_5LMV_040 | Minor groove platform | ||
| IL_5LMV_041 | Single bulged U | ||
| IL_5LMV_042 | Isolated non-canonical cWW pair | ||
| IL_5LMV_043 | No text annotation | ||
| IL_5LMV_044 | Minor groove platform | ||
| IL_5LMV_045 | No text annotation | ||
| IL_5LMV_046 | No text annotation | ||
| IL_5LMV_047 | 180 degree turn | ||
| IL_5LMV_048 | Tandem non-canonical cWW pairs | ||
| IL_5LMV_049 | No text annotation | ||
| IL_5LMV_050 | No text annotation | ||
| IL_5LMV_051 | No text annotation | ||
| IL_5LMV_052 | Isolated non-canonical cWW pair | ||
| IL_5LMV_053 | Isolated non-canonical cWW pair | ||
| IL_5LMV_061 | Isolated non-canonical cWW pair | ||
| IL_5LMV_054 | Tandem non-canonical cWW pairs | ||
| IL_5LMV_055 | Double sheared | ||
| IL_5LMV_056 | UAA/GAN variation | ||
| IL_5LMV_057 | Isolated non-canonical cWW pair | ||
| IL_5LMV_058 | No text annotation | ||
| IL_5LMV_059 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5LMV_001 | No text annotation | ||
| J3_5LMV_014 | No text annotation | ||
| J3_5LMV_015 | No text annotation | ||
| J3_5LMV_002 | No text annotation | ||
| J3_5LMV_016 | No text annotation | ||
| J3_5LMV_003 | No text annotation | ||
| J3_5LMV_004 | No text annotation | ||
| J3_5LMV_005 | No text annotation | ||
| J3_5LMV_006 | No text annotation | ||
| J3_5LMV_007 | No text annotation | ||
| J3_5LMV_008 | No text annotation | ||
| J3_5LMV_009 | No text annotation | ||
| J3_5LMV_017 | No text annotation | ||
| J3_5LMV_010 | No text annotation | ||
| J3_5LMV_019 | No text annotation | ||
| J3_5LMV_011 | No text annotation | ||
| J3_5LMV_012 | No text annotation | ||
| J3_5LMV_018 | No text annotation | ||
| J3_5LMV_013 | No text annotation | ||
| J4_5LMV_005 | No text annotation | ||
| J4_5LMV_001 | No text annotation | ||
| J4_5LMV_002 | No text annotation | ||
| J4_5LMV_003 | No text annotation | ||
| J4_5LMV_004 | tRNA junction | ||
| J5_5LMV_001 | No text annotation | ||
| J5_5LMV_002 | No text annotation |
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