HL_5LMV_009

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5LMV|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LMV_009 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.1428

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5LMV|1|A|C|342
5LMV|1|A|U|343
5LMV|1|A|A|344
5LMV|1|A|C|345
5LMV|1|A|G|346
5LMV|1|A|G|347

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain a

Translation initiation factor IF-2