HL_5LMV_020

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LMV_020 not in the Motif Atlas

Homologous match to HL_6CZR_091

Geometric discrepancy: 0.1248

The information below is about HL_6CZR_091

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5LMV|1|A|C|897
5LMV|1|A|G|898
5LMV|1|A|C|899
5LMV|1|A|A|900
5LMV|1|A|A|901
5LMV|1|A|G|902

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17