HL_5LYB_022

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

5LYB|1|1|C|959, 5LYB|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_022 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.1564

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5LYB|1|1|C|958
5LYB|1|1|C|959
5LYB|1|1|U|960
5LYB|1|1|C|961
5LYB|1|1|A|962
5LYB|1|1|G|963

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N8

60S ribosomal protein L28

Chain N9

60S ribosomal protein L29

Chain Q2

60S ribosomal protein L42-A