HL_5LYB_039
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CACCUUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LYB_039 not in the Motif Atlas
- Homologous match to HL_8P9A_150
- Geometric discrepancy: 0.3875
- The information below is about HL_8P9A_150
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68791.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5LYB|1|1|C|1759
5LYB|1|1|A|1760
5LYB|1|1|C|1761
5LYB|1|1|C|1762
5LYB|1|1|U|1763
5LYB|1|1|U|1764
5LYB|1|1|U|1765
5LYB|1|1|G|1766
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain M9
- 60S ribosomal protein L19-A
- Chain N2
- 60S ribosomal protein L22-A
Coloring options: