HL_5LYB_050

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

5LYB|1|1|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_050 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.0506

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5LYB|1|1|U|2292
5LYB|1|1|C|2293
5LYB|1|1|U|2294
5LYB|1|1|A|2295
5LYB|1|1|A|2296
5LYB|1|1|U|2297
5LYB|1|1|U|2298
5LYB|1|1|A|2299
5LYB|1|1|G|2300

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

aminoacyl-tRNA fragment ACCPmn

Chain N3

60S ribosomal protein L23-A