HL_5LYB_052

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGACAUAGUUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_052 not in the Motif Atlas

Homologous match to HL_5TBW_052

Geometric discrepancy: 0.1142

The information below is about HL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59851.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LYB|1|1|A|2441
5LYB|1|1|G|2442
5LYB|1|1|A|2443
5LYB|1|1|C|2444
5LYB|1|1|A|2445
5LYB|1|1|U|2501
5LYB|1|1|A|2502
5LYB|1|1|G|2503
5LYB|1|1|U|2504
5LYB|1|1|U|2505
5LYB|1|1|U|2506

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L8

60S ribosomal protein L8-A

Chain O6

60S ribosomal protein L36-A