HL_5LYB_081
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- 5LYB|1|2|A|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LYB_081 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.0965
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5LYB|1|2|U|368
5LYB|1|2|A|369
5LYB|1|2|A|370
5LYB|1|2|G|371
5LYB|1|2|G|372
5LYB|1|2|G|373
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C1
- 40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S Ribosomal Protein S11-A
- Chain D2
- 40S ribosomal protein S22-A
- Chain D3
- 40S ribosomal protein S23-A
- Chain S2
- 40S ribosomal protein S2
- Chain S9
- 40S ribosomal protein S9-A
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