HL_5LYB_094

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

5LYB|1|2|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_094 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1104

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5LYB|1|2|G|997
5LYB|1|2|A|998
5LYB|1|2|U|999
5LYB|1|2|C|1000
5LYB|1|2|A|1001
5LYB|1|2|G|1002
5LYB|1|2|A|1003
5LYB|1|2|U|1004
5LYB|1|2|A|1005
5LYB|1|2|C|1006
5LYB|1|2|C|1007

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S Ribosomal Protein S14

Chain D6

40S ribosomal protein S26-B