HL_5LYB_120

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

5LYB|1|5|G|218, 5LYB|1|5|A|219, 5LYB|1|5|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_120 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.0928

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

5LYB|1|5|G|216
5LYB|1|5|U|217
5LYB|1|5|G|218
5LYB|1|5|A|219
5LYB|1|5|G|220
5LYB|1|5|A|221
5LYB|1|5|A|222
5LYB|1|5|U|223
5LYB|1|5|C|224

Current chains

Chain 5

25S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain l4

60S ribosomal protein L4-A

Chain n6

60S ribosomal protein L26-A