HL_5LYB_134
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 5LYB|1|5|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LYB_134 not in the Motif Atlas
- Homologous match to HL_5TBW_021
- Geometric discrepancy: 0.0756
- The information below is about HL_5TBW_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5LYB|1|5|G|910
5LYB|1|5|C|911
5LYB|1|5|G|912
5LYB|1|5|A|913
5LYB|1|5|A|914
5LYB|1|5|A|915
5LYB|1|5|G|916
5LYB|1|5|A|917
5LYB|1|5|C|918
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain o7
- 60S ribosomal protein L37-A
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