HL_5LYB_140
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 5LYB|1|5|A|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LYB_140 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.3661
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5LYB|1|5|C|1239
5LYB|1|5|A|1240
5LYB|1|5|U|1241
5LYB|1|5|G|1242
5LYB|1|5|G|1243
5LYB|1|5|A|1244
5LYB|1|5|A|1245
5LYB|1|5|G|1246
5LYB|1|5|U|1247
5LYB|1|5|C|1248
5LYB|1|5|G|1249
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain m2
- 60S Ribosomal Protein L12
Coloring options: