HL_5LYB_152

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_152 not in the Motif Atlas

Homologous match to HL_5TBW_039

Geometric discrepancy: 0.4877

The information below is about HL_5TBW_039

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_61202.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

5LYB|1|5|A|1760
5LYB|1|5|C|1761
5LYB|1|5|C|1762
5LYB|1|5|U|1763
5LYB|1|5|U|1764
5LYB|1|5|U|1765

Current chains

Chain 5

25S rRNA

Nearby chains

Chain m9

60S ribosomal protein L19-A

Chain n5

60S ribosomal protein L25