HL_5LYB_156

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5LYB|1|5|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_156 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0759

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5LYB|1|5|C|1923
5LYB|1|5|U|1924
5LYB|1|5|U|1925
5LYB|1|5|C|1926
5LYB|1|5|G|1927
5LYB|1|5|G|1928

Current chains

Chain 5

25S rRNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain q1

60S ribosomal protein L41-A

Chain q3

60S ribosomal protein L43-A