HL_5LYB_157

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAC

Length

4 nucleotides

Bulged bases

5LYB|1|5|A|2093

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_157 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.3444

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

5LYB|1|5|G|1952
5LYB|1|5|G|1953
5LYB|1|5|A|2093
5LYB|1|5|C|2094

Current chains

Chain 5

25S rRNA

Nearby chains

Chain m9

60S ribosomal protein L19-A