HL_5LYB_162

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

5LYB|1|5|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_162 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.0749

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5LYB|1|5|G|2253
5LYB|1|5|U|2254
5LYB|1|5|A|2255
5LYB|1|5|A|2256
5LYB|1|5|C|2257
5LYB|1|5|U|2258
5LYB|1|5|A|2259
5LYB|1|5|U|2260
5LYB|1|5|G|2261
5LYB|1|5|A|2262
5LYB|1|5|C|2263

Current chains

Chain 5

25S rRNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain e0

40S ribosomal protein S30-A