HL_5LYB_167

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

5LYB|1|5|U|2571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_167 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.196

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5LYB|1|5|C|2568
5LYB|1|5|A|2569
5LYB|1|5|U|2570
5LYB|1|5|U|2571
5LYB|1|5|C|2572
5LYB|1|5|G|2573

Current chains

Chain 5

25S rRNA

Nearby chains

Chain n7

60S ribosomal protein L27-A