HL_5LYB_198

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

5LYB|1|6|U|493, 5LYB|1|6|U|494, 5LYB|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_198 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.0739

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5LYB|1|6|C|491
5LYB|1|6|A|492
5LYB|1|6|U|493
5LYB|1|6|U|494
5LYB|1|6|C|495
5LYB|1|6|G|496

Current chains

Chain 6

18S rRNA

Nearby chains