HL_5LYB_243

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LYB_243 not in the Motif Atlas

Homologous match to HL_8P9A_140

Geometric discrepancy: 0.4897

The information below is about HL_8P9A_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5LYB|1|1|U|1267
5LYB|1|1|G|1268
5LYB|1|1|U|1269
5LYB|1|1|A|1270
5LYB|1|1|A|1271
5LYB|1|1|C|1272
5LYB|1|1|A|1273
5LYB|1|1|A|1274

Current chains

Chain 1

25S rRNA

Nearby chains