HL_5LZA_012

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5LZA|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZA_012 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.076

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5LZA|1|A|G|410
5LZA|1|A|G|411
5LZA|1|A|A|412
5LZA|1|A|C|413
5LZA|1|A|C|414
5LZA|1|A|A|415
5LZA|1|A|U|416
5LZA|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15