HL_5LZA_054

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZA_054 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1478

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5LZA|1|A|U|2324
5LZA|1|A|G|2325
5LZA|1|A|C|2326
5LZA|1|A|A|2327
5LZA|1|A|A|2328
5LZA|1|A|U|2329
5LZA|1|A|G|2330
5LZA|1|A|G|2331

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain W

50S ribosomal protein L27

Chain v

Transfer RNA; tRNA