3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
UGCAAUGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZB_054 not in the Motif Atlas
Homologous match to HL_7RQB_056
Geometric discrepancy: 0.147
The information below is about HL_7RQB_056
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_12078.4
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
31

Unit IDs

5LZB|1|A|U|2324
5LZB|1|A|G|2325
5LZB|1|A|C|2326
5LZB|1|A|A|2327
5LZB|1|A|A|2328
5LZB|1|A|U|2329
5LZB|1|A|G|2330
5LZB|1|A|G|2331

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L16
Chain W
50S ribosomal protein L27
Chain v
Transfer RNA; tRNA

Coloring options:


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