5LZB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5LZB_099 | 1/a/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5LZB_001 | No text annotation | ||
| HL_5LZB_002 | No text annotation | ||
| HL_5LZB_003 | No text annotation | ||
| HL_5LZB_004 | No text annotation | ||
| HL_5LZB_005 | No text annotation | ||
| HL_5LZB_006 | No text annotation | ||
| HL_5LZB_007 | No text annotation | ||
| HL_5LZB_008 | No text annotation | ||
| HL_5LZB_009 | T-loop with 2 stacked bulged bases | ||
| HL_5LZB_010 | T-loop with unstacked turn | ||
| HL_5LZB_011 | No text annotation | ||
| HL_5LZB_012 | Pseudoknot geometry | ||
| HL_5LZB_013 | GNRA | ||
| HL_5LZB_014 | GNRA | ||
| HL_5LZB_015 | UNCG variation | ||
| HL_5LZB_110 | Mini UNCG with extended bulge | ||
| HL_5LZB_016 | No text annotation | ||
| HL_5LZB_017 | No text annotation | ||
| HL_5LZB_018 | GNRA | ||
| HL_5LZB_019 | No text annotation | ||
| HL_5LZB_020 | GNRA wlth tandem sheared | ||
| HL_5LZB_021 | No text annotation | ||
| HL_5LZB_022 | No text annotation | ||
| HL_5LZB_023 | No text annotation | ||
| HL_5LZB_024 | No text annotation | ||
| HL_5LZB_025 | No text annotation | ||
| HL_5LZB_111 | GNRA | ||
| HL_5LZB_026 | No text annotation | ||
| HL_5LZB_027 | GNRA wlth tandem sheared | ||
| HL_5LZB_028 | No text annotation | ||
| HL_5LZB_112 | No text annotation | ||
| HL_5LZB_029 | GNRA | ||
| HL_5LZB_030 | T-loop with 2 stacked bulged bases | ||
| HL_5LZB_031 | Pseudoknot geometry with 3' bulge | ||
| HL_5LZB_032 | GNRA | ||
| HL_5LZB_033 | No text annotation | ||
| HL_5LZB_034 | Mini UNCG with extended bulge | ||
| HL_5LZB_035 | Pseudoknot geometry with 3' bulge | ||
| HL_5LZB_036 | UNCG | ||
| HL_5LZB_037 | Mini UNCG | ||
| HL_5LZB_038 | No text annotation | ||
| HL_5LZB_039 | GNRA | ||
| HL_5LZB_040 | No text annotation | ||
| HL_5LZB_041 | Mini UNCG | ||
| HL_5LZB_042 | No text annotation | ||
| HL_5LZB_043 | No text annotation | ||
| HL_5LZB_044 | GNRA related | ||
| HL_5LZB_045 | GNRA variation | ||
| HL_5LZB_046 | No text annotation | ||
| HL_5LZB_047 | No text annotation | ||
| HL_5LZB_113 | No text annotation | ||
| HL_5LZB_048 | No text annotation | ||
| HL_5LZB_049 | No text annotation | ||
| HL_5LZB_050 | No text annotation | ||
| HL_5LZB_051 | No text annotation | ||
| HL_5LZB_052 | No text annotation | ||
| HL_5LZB_053 | No text annotation | ||
| HL_5LZB_116 | No text annotation | ||
| HL_5LZB_054 | Pseudoknot geometry | ||
| HL_5LZB_055 | GNRA | ||
| HL_5LZB_056 | GNRA | ||
| HL_5LZB_057 | No text annotation | ||
| HL_5LZB_058 | No text annotation | ||
| HL_5LZB_059 | GNRA variation | ||
| HL_5LZB_060 | No text annotation | ||
| HL_5LZB_061 | GNRA | ||
| HL_5LZB_062 | GNRA | ||
| HL_5LZB_063 | Ribsomal LSU H95 | ||
| HL_5LZB_064 | No text annotation | ||
| HL_5LZB_065 | Mini UNCG | ||
| HL_5LZB_066 | No text annotation | ||
| HL_5LZB_067 | GNRA | ||
| HL_5LZB_114 | No text annotation | ||
| HL_5LZB_068 | No text annotation | ||
| HL_5LZB_069 | Mini UNCG | ||
| HL_5LZB_070 | No text annotation | ||
| HL_5LZB_071 | No text annotation | ||
| HL_5LZB_072 | GNRA | ||
| HL_5LZB_073 | GNRA | ||
| HL_5LZB_074 | UNCG | ||
| HL_5LZB_075 | GNRA related | ||
| HL_5LZB_076 | GNRA | ||
| HL_5LZB_077 | No text annotation | ||
| HL_5LZB_078 | UNCG | ||
| HL_5LZB_079 | GNRA | ||
| HL_5LZB_080 | UNCG | ||
| HL_5LZB_081 | GNRA wlth extra near cWW | ||
| HL_5LZB_082 | No text annotation | ||
| HL_5LZB_115 | GNRA variation | ||
| HL_5LZB_083 | No text annotation | ||
| HL_5LZB_084 | No text annotation | ||
| HL_5LZB_085 | GNRA | ||
| HL_5LZB_086 | No text annotation | ||
| HL_5LZB_087 | No text annotation | ||
| HL_5LZB_088 | GNRA | ||
| HL_5LZB_089 | GNRA | ||
| HL_5LZB_090 | No text annotation | ||
| HL_5LZB_091 | GNRA | ||
| HL_5LZB_092 | No text annotation | ||
| HL_5LZB_093 | GNRA | ||
| HL_5LZB_094 | T-loop related | ||
| HL_5LZB_095 | No text annotation | ||
| HL_5LZB_096 | GNRA | ||
| HL_5LZB_097 | GNRA | ||
| HL_5LZB_098 | T-loop with 3 stacked bulged bases | ||
| HL_5LZB_100 | UNCG | ||
| HL_5LZB_101 | GNRA | ||
| HL_5LZB_102 | tRNA D-loop | ||
| HL_5LZB_103 | tRNA anticodon loop | ||
| HL_5LZB_104 | T-loop with 2 stacked bulged bases | ||
| HL_5LZB_105 | No text annotation | ||
| HL_5LZB_106 | No text annotation | ||
| HL_5LZB_107 | tRNA anticodon loop | ||
| HL_5LZB_108 | No text annotation | ||
| HL_5LZB_109 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5LZB_037 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_5LZB_043 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
| IL_5LZB_098 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_5LZB_161 | 1/a/998:999, 1/a/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_5LZB_166 | 1/a/1060:1061, 1/a/1195:1197 | Single bulged A | geometric IL_5J7L_049 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5LZB_001 | Triple sheared with non-canonical cWW | ||
| IL_5LZB_002 | Single bulged A | ||
| IL_5LZB_003 | Minor groove platform | ||
| IL_5LZB_004 | No text annotation | ||
| IL_5LZB_005 | Single stack bend | ||
| IL_5LZB_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5LZB_007 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_5LZB_008 | No text annotation | ||
| IL_5LZB_009 | No text annotation | ||
| IL_5LZB_010 | No text annotation | ||
| IL_5LZB_011 | No text annotation | ||
| IL_5LZB_012 | Double sheared | ||
| IL_5LZB_013 | Isolated non-canonical cWW pair | ||
| IL_5LZB_014 | AAA cross-strand stack | ||
| IL_5LZB_015 | Isolated non-canonical cWW pair | ||
| IL_5LZB_016 | tHW-tHW cross-strand stack | ||
| IL_5LZB_017 | Single bulged A | ||
| IL_5LZB_018 | Single bulged G | ||
| IL_5LZB_019 | Triple sheared | ||
| IL_5LZB_020 | Major groove platform | ||
| IL_5LZB_021 | Multiple bulged bases | ||
| IL_5LZB_022 | Single stack bend | ||
| IL_5LZB_023 | 90 degree turn | ||
| IL_5LZB_183 | No text annotation | ||
| IL_5LZB_024 | Stack outside cWW | ||
| IL_5LZB_025 | Single stack bend | ||
| IL_5LZB_026 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5LZB_027 | Single bulged G | ||
| IL_5LZB_028 | C-loop with bulged stacked A's | ||
| IL_5LZB_029 | Isolated non-canonical cWW pair | ||
| IL_5LZB_030 | Double sheared with non-canonical cWW | ||
| IL_5LZB_031 | No text annotation | ||
| IL_5LZB_032 | Single bulged C | ||
| IL_5LZB_033 | UAA/GAN | ||
| IL_5LZB_034 | SSU/LSU pseudoknot | ||
| IL_5LZB_035 | Single bulged U | ||
| IL_5LZB_036 | Kink-turn related | ||
| IL_5LZB_038 | Isolated non-canonical cWW pair | ||
| IL_5LZB_039 | Tandem non-canonical cWW pairs | ||
| IL_5LZB_040 | Kink-turn | ||
| IL_5LZB_041 | No text annotation | ||
| IL_5LZB_042 | Major groove platform | ||
| IL_5LZB_044 | No text annotation | ||
| IL_5LZB_045 | Kink-turn | ||
| IL_5LZB_046 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5LZB_047 | Major groove platform; stack outside cWW | ||
| IL_5LZB_048 | C-loop | ||
| IL_5LZB_049 | UAA/GAN | ||
| IL_5LZB_050 | tSH-tHW-tHS | ||
| IL_5LZB_051 | No text annotation | ||
| IL_5LZB_052 | UAA/GAN | ||
| IL_5LZB_053 | Tandem non-canonical cWW pairs | ||
| IL_5LZB_054 | tSH-tHW | ||
| IL_5LZB_055 | Single bulged U | ||
| IL_5LZB_056 | No text annotation | ||
| IL_5LZB_184 | tSH-tHW-tHS | ||
| IL_5LZB_057 | No text annotation | ||
| IL_5LZB_058 | 180 degree turn | ||
| IL_5LZB_059 | Single bulged A | ||
| IL_5LZB_060 | UAA/GAN variation | ||
| IL_5LZB_061 | No text annotation | ||
| IL_5LZB_062 | Isolated tWW turn | ||
| IL_5LZB_063 | Major groove platform; stack outside cWW | ||
| IL_5LZB_185 | No text annotation | ||
| IL_5LZB_064 | Intercalated tWH | ||
| IL_5LZB_065 | tSH-tSH-tHH-tHS | ||
| IL_5LZB_066 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_5LZB_067 | Triple sheared | ||
| IL_5LZB_068 | Single bulged C | ||
| IL_5LZB_069 | Single bulged A | ||
| IL_5LZB_070 | Kink-turn related | ||
| IL_5LZB_071 | Minor groove platform, major groove intercalation | ||
| IL_5LZB_072 | Major groove intercalation | ||
| IL_5LZB_073 | Major groove minor groove platform; mini C-loop | ||
| IL_5LZB_186 | No text annotation | ||
| IL_5LZB_074 | UAA/GAN related | ||
| IL_5LZB_075 | Bulged stacked bases | ||
| IL_5LZB_076 | No text annotation | ||
| IL_5LZB_077 | Major groove platform | ||
| IL_5LZB_078 | No text annotation | ||
| IL_5LZB_079 | No text annotation | ||
| IL_5LZB_187 | Single bulged U | ||
| IL_5LZB_080 | No text annotation | ||
| IL_5LZB_081 | Minor groove platform | ||
| IL_5LZB_082 | Isolated tHS basepair with bulges | ||
| IL_5LZB_083 | Isolated non-canonical cWW pair | ||
| IL_5LZB_084 | Isolated non-canonical cWW pair | ||
| IL_5LZB_188 | No text annotation | ||
| IL_5LZB_085 | No text annotation | ||
| IL_5LZB_086 | No text annotation | ||
| IL_5LZB_087 | No text annotation | ||
| IL_5LZB_088 | No text annotation | ||
| IL_5LZB_089 | Single bulged U | ||
| IL_5LZB_090 | Double sheared | ||
| IL_5LZB_091 | No text annotation | ||
| IL_5LZB_189 | Single stack bend | ||
| IL_5LZB_092 | No text annotation | ||
| IL_5LZB_190 | Major groove platform | ||
| IL_5LZB_093 | Major groove platform with extra pair | ||
| IL_5LZB_191 | Major groove platform | ||
| IL_5LZB_094 | Major groove minor groove platform with extra cWW | ||
| IL_5LZB_095 | Double sheared with non-canonical cWW | ||
| IL_5LZB_192 | Major groove platform | ||
| IL_5LZB_096 | No text annotation | ||
| IL_5LZB_097 | Isolated non-canonical cWW with bulges | ||
| IL_5LZB_099 | Major groove platform with intercalation | ||
| IL_5LZB_100 | Tandem non-canonical cWW pairs | ||
| IL_5LZB_101 | Single bulged A | ||
| IL_5LZB_102 | tSH-tHS-tHW | ||
| IL_5LZB_103 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_5LZB_104 | C-loop | ||
| IL_5LZB_105 | UAA/GAN related, with intercalation | ||
| IL_5LZB_106 | Multiple bulged bases | ||
| IL_5LZB_107 | UAA/GAN with extra cWW | ||
| IL_5LZB_108 | Single bulged A | ||
| IL_5LZB_109 | No text annotation | ||
| IL_5LZB_110 | Major groove intercalation | ||
| IL_5LZB_111 | Multiple bulged bases with non-canonical cWW | ||
| IL_5LZB_112 | tHS double platform | ||
| IL_5LZB_113 | Major groove intercalation | ||
| IL_5LZB_114 | No text annotation | ||
| IL_5LZB_115 | Major groove minor groove platform; mini C-loop | ||
| IL_5LZB_116 | Symmetric double minor groove platform | ||
| IL_5LZB_117 | Bacterial 5S Loop E | ||
| IL_5LZB_118 | Single bulged G | ||
| IL_5LZB_119 | Single bulged A | ||
| IL_5LZB_120 | No text annotation | ||
| IL_5LZB_121 | Minor groove platform | ||
| IL_5LZB_122 | Multiple bulged bases | ||
| IL_5LZB_123 | Minor groove platform with extra cWW | ||
| IL_5LZB_124 | Minor groove platform | ||
| IL_5LZB_193 | Single bulged G | ||
| IL_5LZB_125 | Single bulged G, near cWW | ||
| IL_5LZB_126 | Isolated non-canonical cWW pair | ||
| IL_5LZB_127 | Minor groove platform related | ||
| IL_5LZB_128 | Isolated cWH basepair | ||
| IL_5LZB_129 | tWH-tWH-tHW-tHW | ||
| IL_5LZB_130 | Minor groove platform | ||
| IL_5LZB_131 | Kink-turn with non-sequential stacking | ||
| IL_5LZB_132 | No text annotation | ||
| IL_5LZB_133 | C-loop | ||
| IL_5LZB_134 | Single bulged U | ||
| IL_5LZB_135 | C-loop | ||
| IL_5LZB_136 | Single bulged G | ||
| IL_5LZB_137 | No text annotation | ||
| IL_5LZB_138 | No text annotation | ||
| IL_5LZB_139 | tSH-tHW-tWW | ||
| IL_5LZB_140 | No text annotation | ||
| IL_5LZB_141 | SSU/LSU pseudoknot | ||
| IL_5LZB_142 | Kink-turn related | ||
| IL_5LZB_143 | No text annotation | ||
| IL_5LZB_144 | tSH-tHW-tHS | ||
| IL_5LZB_145 | Major groove platform | ||
| IL_5LZB_146 | Major groove minor groove platform; mini C-loop | ||
| IL_5LZB_147 | No text annotation | ||
| IL_5LZB_148 | Major groove platform; stack outside cWW | ||
| IL_5LZB_149 | Single stack bend | ||
| IL_5LZB_150 | Tandem non-canonical cWW pairs | ||
| IL_5LZB_194 | Triple non-canonical cWW pairs | ||
| IL_5LZB_151 | No text annotation | ||
| IL_5LZB_152 | Kink-turn | ||
| IL_5LZB_153 | Left turn | ||
| IL_5LZB_154 | tSH-tHW-tHS | ||
| IL_5LZB_155 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5LZB_156 | Single bulged A | ||
| IL_5LZB_195 | Isolated non-canonical cWW with bulges | ||
| IL_5LZB_157 | Single bulged G | ||
| IL_5LZB_158 | Minor groove platform | ||
| IL_5LZB_159 | Minor groove platform | ||
| IL_5LZB_160 | Minor groove platform | ||
| IL_5LZB_162 | Single bulged U | ||
| IL_5LZB_163 | No text annotation | ||
| IL_5LZB_164 | Isolated cWS basepair | ||
| IL_5LZB_165 | Minor groove platform | ||
| IL_5LZB_167 | Isolated non-canonical cWW pair | ||
| IL_5LZB_168 | No text annotation | ||
| IL_5LZB_169 | Minor groove platform | ||
| IL_5LZB_170 | No text annotation | ||
| IL_5LZB_171 | 180 degree turn | ||
| IL_5LZB_172 | Double sheared with non-canonical cWW | ||
| IL_5LZB_173 | No text annotation | ||
| IL_5LZB_174 | No text annotation | ||
| IL_5LZB_175 | No text annotation | ||
| IL_5LZB_196 | Isolated non-canonical cWW pair | ||
| IL_5LZB_176 | No text annotation | ||
| IL_5LZB_197 | No text annotation | ||
| IL_5LZB_177 | Isolated non-canonical cWW pair | ||
| IL_5LZB_178 | Double sheared | ||
| IL_5LZB_179 | Triple sheared related | ||
| IL_5LZB_198 | No text annotation | ||
| IL_5LZB_180 | Single bulged A | ||
| IL_5LZB_181 | No text annotation | ||
| IL_5LZB_182 | Single bulged U |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5LZB_003 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_5LZB_014 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_5LZB_031 | 1/a/46:52, 1/a/359:367, 1/a/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J4_5LZB_003 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_5LZB_004 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_5LZB_005 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_5J7L_023 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5LZB_001 | No text annotation | ||
| J3_5LZB_026 | No text annotation | ||
| J3_5LZB_027 | No text annotation | ||
| J3_5LZB_002 | No text annotation | ||
| J3_5LZB_028 | No text annotation | ||
| J3_5LZB_004 | No text annotation | ||
| J3_5LZB_005 | No text annotation | ||
| J3_5LZB_006 | No text annotation | ||
| J3_5LZB_007 | No text annotation | ||
| J3_5LZB_029 | No text annotation | ||
| J3_5LZB_008 | Kink-turn 3-way junction | ||
| J3_5LZB_030 | No text annotation | ||
| J3_5LZB_009 | No text annotation | ||
| J3_5LZB_010 | No text annotation | ||
| J3_5LZB_011 | No text annotation | ||
| J3_5LZB_012 | No text annotation | ||
| J3_5LZB_013 | No text annotation | ||
| J3_5LZB_015 | No text annotation | ||
| J3_5LZB_032 | No text annotation | ||
| J3_5LZB_016 | No text annotation | ||
| J3_5LZB_017 | No text annotation | ||
| J3_5LZB_033 | No text annotation | ||
| J3_5LZB_018 | No text annotation | ||
| J3_5LZB_019 | No text annotation | ||
| J3_5LZB_020 | No text annotation | ||
| J3_5LZB_034 | No text annotation | ||
| J3_5LZB_035 | No text annotation | ||
| J3_5LZB_021 | No text annotation | ||
| J3_5LZB_022 | No text annotation | ||
| J3_5LZB_036 | No text annotation | ||
| J3_5LZB_023 | No text annotation | ||
| J3_5LZB_024 | No text annotation | ||
| J3_5LZB_025 | No text annotation | ||
| J4_5LZB_001 | No text annotation | ||
| J4_5LZB_002 | No text annotation | ||
| J4_5LZB_006 | No text annotation | ||
| J4_5LZB_007 | No text annotation | ||
| J4_5LZB_008 | No text annotation | ||
| J4_5LZB_009 | No text annotation | ||
| J4_5LZB_010 | No text annotation | ||
| J4_5LZB_011 | No text annotation | ||
| J4_5LZB_012 | No text annotation | ||
| J4_5LZB_013 | No text annotation | ||
| J4_5LZB_014 | tRNA junction | ||
| J5_5LZB_001 | No text annotation | ||
| J5_5LZB_002 | No text annotation | ||
| J5_5LZB_003 | No text annotation | ||
| J5_5LZB_004 | No text annotation | ||
| J5_5LZB_005 | No text annotation | ||
| J5_5LZB_006 | No text annotation | ||
| J5_5LZB_007 | No text annotation | ||
| J5_5LZB_008 | No text annotation | ||
| J5_5LZB_009 | No text annotation | ||
| J5_5LZB_010 | No text annotation | ||
| J6_5LZB_001 | No text annotation | ||
| J6_5LZB_002 | No text annotation | ||
| J7_5LZB_001 | No text annotation | ||
| J7_5LZB_002 | No text annotation |
Coloring options: