HL_5LZB_074

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5LZB|1|a|U|209, 5LZB|1|a|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZB_074 not in the Motif Atlas

Geometric match to HL_3V7E_002

Geometric discrepancy: 0.3915

The information below is about HL_3V7E_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5LZB|1|a|C|207
5LZB|1|a|U|208
5LZB|1|a|U|209
5LZB|1|a|C|210
5LZB|1|a|G|211
5LZB|1|a|G|212

Current chains

Chain a

16S ribosomal RNA

Nearby chains