HL_5LZB_108

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GCCAGC

Length

6 nucleotides

Bulged bases

5LZB|1|y|G|47|||I

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZB_108 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.3856

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5LZB|1|y|G|47|||E
5LZB|1|y|C|47|||F
5LZB|1|y|C|47|||G
5LZB|1|y|A|47|||H
5LZB|1|y|G|47|||I
5LZB|1|y|C|47|||J

Current chains

Chain y

Sec-tRNASec

Nearby chains

Chain z

Selenocysteine-specific elongation factor