HL_5LZC_006
3D structure
- PDB id
- 5LZC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- GAAACAUC
- Length
- 8 nucleotides
- Bulged bases
- 5LZC|1|A|A|196
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZC_006 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.1319
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
5LZC|1|A|G|194
5LZC|1|A|A|195
5LZC|1|A|A|196
5LZC|1|A|A|197
5LZC|1|A|C|198
5LZC|1|A|A|199
5LZC|1|A|U|200
5LZC|1|A|C|201
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L28
- Chain w
- CCA 3' end of E-site tRNASec (low occupancy)
Coloring options: