3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
CGACGGUUG
Length
9 nucleotides
Bulged bases
5LZC|1|A|A|1453, 5LZC|1|A|C|1454
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZC_034 not in the Motif Atlas
Geometric match to HL_5J7L_169
Geometric discrepancy: 0.1531
The information below is about HL_5J7L_169
Detailed Annotation
Mini UNCG with extended bulge
Broad Annotation
Mini UNCG with extended bulge
Motif group
HL_22622.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

5LZC|1|A|C|1451
5LZC|1|A|G|1452
5LZC|1|A|A|1453
5LZC|1|A|C|1454
5LZC|1|A|G|1455
5LZC|1|A|G|1456
5LZC|1|A|U|1457
5LZC|1|A|U|1458
5LZC|1|A|G|1459

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain N
50S ribosomal protein L17

Coloring options:


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