HL_5LZC_047

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5LZC|1|A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZC_047 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.153

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5LZC|1|A|G|1949
5LZC|1|A|G|1950
5LZC|1|A|U|1951
5LZC|1|A|A|1952
5LZC|1|A|A|1953
5LZC|1|A|G|1954
5LZC|1|A|U|1955
5LZC|1|A|U|1956
5LZC|1|A|C|1957

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA