3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
5LZC|1|A|A|2268, 5LZC|1|A|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5LZC_052 not in the Motif Atlas
Homologous match to HL_7RQB_054
Geometric discrepancy: 0.1149
The information below is about HL_7RQB_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.6
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
7

Unit IDs

5LZC|1|A|C|2264
5LZC|1|A|U|2265
5LZC|1|A|A|2266
5LZC|1|A|A|2267
5LZC|1|A|A|2268
5LZC|1|A|G|2269
5LZC|1|A|A|2270
5LZC|1|A|G|2271
5LZC|1|A|U|2272
5LZC|1|A|A|2273
5LZC|1|A|A|2274
5LZC|1|A|C|2275
5LZC|1|A|G|2276

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L16
Chain W
50S ribosomal protein L27

Coloring options:


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