HL_5LZC_064

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5LZC|1|A|G|2751, 5LZC|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZC_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1286

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5LZC|1|A|C|2745
5LZC|1|A|U|2746
5LZC|1|A|G|2747
5LZC|1|A|A|2748
5LZC|1|A|A|2749
5LZC|1|A|A|2750
5LZC|1|A|G|2751
5LZC|1|A|C|2752
5LZC|1|A|A|2753
5LZC|1|A|U|2754
5LZC|1|A|C|2755
5LZC|1|A|U|2756
5LZC|1|A|A|2757
5LZC|1|A|A|2758
5LZC|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13