HL_5LZC_094

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5LZC|1|a|G|1094

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZC_094 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1247

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

5LZC|1|a|G|1089
5LZC|1|a|U|1090
5LZC|1|a|U|1091
5LZC|1|a|A|1092
5LZC|1|a|A|1093
5LZC|1|a|G|1094
5LZC|1|a|U|1095
5LZC|1|a|C|1096

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7

Chain u

30S ribosomal protein S21