HL_5LZD_012

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5LZD|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_012 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.09

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5LZD|1|A|G|410
5LZD|1|A|G|411
5LZD|1|A|A|412
5LZD|1|A|C|413
5LZD|1|A|C|414
5LZD|1|A|A|415
5LZD|1|A|U|416
5LZD|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains