HL_5LZD_052

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5LZD|1|A|A|2268, 5LZD|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_052 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0877

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5LZD|1|A|C|2264
5LZD|1|A|U|2265
5LZD|1|A|A|2266
5LZD|1|A|A|2267
5LZD|1|A|A|2268
5LZD|1|A|G|2269
5LZD|1|A|A|2270
5LZD|1|A|G|2271
5LZD|1|A|U|2272
5LZD|1|A|A|2273
5LZD|1|A|A|2274
5LZD|1|A|C|2275
5LZD|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27