HL_5LZD_054

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_054 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1335

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5LZD|1|A|U|2324
5LZD|1|A|G|2325
5LZD|1|A|C|2326
5LZD|1|A|A|2327
5LZD|1|A|A|2328
5LZD|1|A|U|2329
5LZD|1|A|G|2330
5LZD|1|A|G|2331

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L27

Chain v

Transfer RNA; tRNA