HL_5LZD_077

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0964

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LZD|1|a|A|320
5LZD|1|a|A|321
5LZD|1|a|C|322
5LZD|1|a|U|323
5LZD|1|a|G|324
5LZD|1|a|A|325
5LZD|1|a|G|326
5LZD|1|a|A|327
5LZD|1|a|C|328
5LZD|1|a|A|329
5LZD|1|a|C|330
5LZD|1|a|G|331
5LZD|1|a|G|332
5LZD|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20