HL_5LZD_083

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_083 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.1224

The information below is about HL_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5LZD|1|a|G|617
5LZD|1|a|C|618
5LZD|1|a|U|619
5LZD|1|a|C|620
5LZD|1|a|A|621
5LZD|1|a|A|622
5LZD|1|a|C|623

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16