HL_5LZD_108

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCAGC

Length

6 nucleotides

Bulged bases

5LZD|1|y|G|47|||I

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_108 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2709

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5LZD|1|y|G|47|||E
5LZD|1|y|C|47|||F
5LZD|1|y|C|47|||G
5LZD|1|y|A|47|||H
5LZD|1|y|G|47|||I
5LZD|1|y|C|47|||J

Current chains

Chain y

Sec-tRNASec

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain z

Selenocysteine-specific elongation factor