HL_5LZD_112

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGCC(G7M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_112 not in the Motif Atlas

Homologous match to HL_5J7L_205

Geometric discrepancy: 0.1084

The information below is about HL_5J7L_205

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5LZD|1|a|C|522
5LZD|1|a|A|523
5LZD|1|a|G|524
5LZD|1|a|C|525
5LZD|1|a|C|526
5LZD|1|a|G7M|527

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain x

SECIS mRNA