HL_5LZD_116

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

5LZD|1|A|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZD_116 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.2185

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5LZD|1|A|G|2304
5LZD|1|A|U|2305
5LZD|1|A|C|2306
5LZD|1|A|G|2307
5LZD|1|A|G|2308
5LZD|1|A|A|2309
5LZD|1|A|C|2310
5LZD|1|A|A|2311
5LZD|1|A|U|2312

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5