HL_5LZE_065

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

5LZE|1|A|U|2797, 5LZE|1|A|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZE_065 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.3933

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5LZE|1|A|C|2795
5LZE|1|A|U|2796
5LZE|1|A|U|2797
5LZE|1|A|U|2798
5LZE|1|A|A|2799
5LZE|1|A|A|2800
5LZE|1|A|G|2801

Current chains

Chain A

23S ribosomal RNA

Nearby chains