HL_5LZE_072

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZE_072 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3985

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5LZE|1|a|U|157
5LZE|1|a|G|158
5LZE|1|a|G|159
5LZE|1|a|A|160
5LZE|1|a|A|161
5LZE|1|a|A|162
5LZE|1|a|C|163
5LZE|1|a|G|164

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19

Chain t

30S ribosomal protein S20