HL_5LZE_109
3D structure
- PDB id
- 5LZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- G(5MU)(PSU)CGACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5LZE_109 not in the Motif Atlas
- Homologous match to HL_3RG5_008
- Geometric discrepancy: 0.1838
- The information below is about HL_3RG5_008
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5LZE|1|y|G|53
5LZE|1|y|5MU|54
5LZE|1|y|PSU|55
5LZE|1|y|C|56
5LZE|1|y|G|57
5LZE|1|y|A|58
5LZE|1|y|C|59
5LZE|1|y|U|60
5LZE|1|y|C|61
Current chains
- Chain y
- fMetSec-tRNASec
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
Coloring options: