HL_5LZF_034

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5LZF|1|A|G|1452, 5LZF|1|A|A|1453, 5LZF|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZF_034 not in the Motif Atlas

Geometric match to HL_5SWD_005

Geometric discrepancy: 0.1189

The information below is about HL_5SWD_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5LZF|1|A|C|1451
5LZF|1|A|G|1452
5LZF|1|A|A|1453
5LZF|1|A|C|1454
5LZF|1|A|G|1455
5LZF|1|A|G|1456
5LZF|1|A|U|1457
5LZF|1|A|U|1458
5LZF|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17