5LZF Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5LZF_001 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_5LZF_003 | 1/A/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
| HL_5LZF_008 | 1/A/246:252 | No text annotation | homologous HL_4WF9_008 HL_76371.1 | |
| HL_5LZF_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_5LZF_010 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_5LZF_012 | 1/A/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.4 | |
| HL_5LZF_014 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_5LZF_016 | 1/A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_5LZF_021 | 1/A/744:753 | No text annotation | homologous HL_5J7L_155 NA | |
| HL_5LZF_022 | 1/A/779:785 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_5LZF_026 | 1/A/978:985 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_5LZF_029 | 1/A/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_5LZF_031 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_5LZF_032 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_5LZF_033 | 1/A/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_5LZF_034 | 1/A/1451:1459 | Mini UNCG | geometric HL_5SWD_005 HL_90436.1 | |
| HL_5LZF_038 | 1/A/1612:1619 | No text annotation | homologous HL_5J7L_173 NA | |
| HL_5LZF_039 | 1/A/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_5LZF_040 | 1/A/1691:1696 | UNCG | homologous HL_5J7L_175 NA | |
| HL_5LZF_043 | 1/A/1777:1787 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_5LZF_044 | 1/A/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_5LZF_047 | 1/A/1949:1957 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_5LZF_048 | 1/A/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_5LZF_050 | 1/A/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_5LZF_051 | 1/A/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_11974.1 | |
| HL_5LZF_052 | 1/A/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_02042.1 | |
| HL_5LZF_057 | 1/A/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_5LZF_060 | 1/A/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_5LZF_062 | 1/A/2658:2663 | GNRA | geometric HL_4V9F_066 HL_34789.1 | |
| HL_5LZF_113 | 1/B/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
| HL_5LZF_068 | 1/B/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_5LZF_069 | 1/B/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_5LZF_070 | 1/a/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_5LZF_077 | 1/a/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_5LZF_084 | 1/a/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_5LZF_086 | 1/a/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_5LZF_088 | 1/a/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_5LZF_090 | 1/a/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_5LZF_093 | 1/a/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5LZF_002 | No text annotation | ||
| HL_5LZF_004 | No text annotation | ||
| HL_5LZF_115 | No text annotation | ||
| HL_5LZF_005 | No text annotation | ||
| HL_5LZF_006 | No text annotation | ||
| HL_5LZF_007 | No text annotation | ||
| HL_5LZF_011 | No text annotation | ||
| HL_5LZF_013 | GNRA | ||
| HL_5LZF_015 | Mini UNCG with extended bulge | ||
| HL_5LZF_017 | No text annotation | ||
| HL_5LZF_018 | GNRA | ||
| HL_5LZF_019 | No text annotation | ||
| HL_5LZF_020 | GNRA wlth tandem sheared | ||
| HL_5LZF_023 | No text annotation | ||
| HL_5LZF_024 | No text annotation | ||
| HL_5LZF_025 | No text annotation | ||
| HL_5LZF_110 | GNRA | ||
| HL_5LZF_027 | GNRA wlth tandem sheared | ||
| HL_5LZF_028 | No text annotation | ||
| HL_5LZF_030 | T-loop with 2 stacked bulged bases | ||
| HL_5LZF_035 | Pseudoknot geometry with 3' bulge | ||
| HL_5LZF_036 | No text annotation | ||
| HL_5LZF_116 | No text annotation | ||
| HL_5LZF_037 | No text annotation | ||
| HL_5LZF_041 | No text annotation | ||
| HL_5LZF_042 | No text annotation | ||
| HL_5LZF_045 | GNRA variation | ||
| HL_5LZF_046 | No text annotation | ||
| HL_5LZF_049 | No text annotation | ||
| HL_5LZF_111 | UNCG | ||
| HL_5LZF_053 | No text annotation | ||
| HL_5LZF_112 | No text annotation | ||
| HL_5LZF_054 | Pseudoknot geometry | ||
| HL_5LZF_055 | GNRA | ||
| HL_5LZF_056 | GNRA | ||
| HL_5LZF_058 | No text annotation | ||
| HL_5LZF_059 | GNRA variation | ||
| HL_5LZF_061 | GNRA | ||
| HL_5LZF_063 | Ribsomal LSU H95 | ||
| HL_5LZF_064 | No text annotation | ||
| HL_5LZF_065 | Mini UNCG | ||
| HL_5LZF_066 | No text annotation | ||
| HL_5LZF_067 | GNRA | ||
| HL_5LZF_071 | No text annotation | ||
| HL_5LZF_072 | GNRA with extra near cWW | ||
| HL_5LZF_073 | GNRA | ||
| HL_5LZF_074 | Mini UNCG | ||
| HL_5LZF_075 | GNRA related | ||
| HL_5LZF_076 | GNRA | ||
| HL_5LZF_078 | UNCG | ||
| HL_5LZF_079 | GNRA | ||
| HL_5LZF_080 | UNCG | ||
| HL_5LZF_081 | GNRA wlth extra near cWW | ||
| HL_5LZF_082 | No text annotation | ||
| HL_5LZF_114 | GNRA variation | ||
| HL_5LZF_083 | GNRA-like with tWH | ||
| HL_5LZF_085 | GNRA | ||
| HL_5LZF_087 | No text annotation | ||
| HL_5LZF_089 | GNRA | ||
| HL_5LZF_091 | GNRA | ||
| HL_5LZF_092 | No text annotation | ||
| HL_5LZF_094 | T-loop related | ||
| HL_5LZF_095 | No text annotation | ||
| HL_5LZF_096 | GNRA | ||
| HL_5LZF_097 | GNRA | ||
| HL_5LZF_098 | T-loop with 3 stacked bulged bases | ||
| HL_5LZF_099 | No text annotation | ||
| HL_5LZF_100 | UNCG | ||
| HL_5LZF_101 | GNRA | ||
| HL_5LZF_102 | tRNA D-loop | ||
| HL_5LZF_103 | tRNA anticodon loop | ||
| HL_5LZF_104 | T-loop with 2 stacked bulged bases | ||
| HL_5LZF_105 | No text annotation | ||
| HL_5LZF_106 | tRNA D-loop | ||
| HL_5LZF_107 | tRNA anticodon loop | ||
| HL_5LZF_108 | No text annotation | ||
| HL_5LZF_109 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5LZF_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.1 | |
| IL_5LZF_010 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_5LZF_011 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_5LZF_015 | 1/A/672:674, 1/A/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_5LZF_016 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_5LZF_021 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_5LZF_027 | 1/A/862:863, 1/A/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
| IL_5LZF_028 | 1/A/864:868, 1/A/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_5LZF_032 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_5LZF_034 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_5LZF_036 | 1/A/1018:1024, 1/A/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_5LZF_044 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_5LZF_046 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_5LZF_047 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_74641.1 | |
| IL_5LZF_048 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_5LZF_049 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_5LZF_201 | 1/A/1353:1355, 1/A/1376:1379 | No text annotation | ||
| IL_5LZF_053 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_5LZF_185 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_5LZF_058 | 1/A/1481:1482, 1/A/1507:1510 | 180 degree turn | homologous IL_5J7L_301 NA | |
| IL_5LZF_186 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_5LZF_064 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_5LZF_070 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_5LZF_071 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_5LZF_072 | 1/A/1841:1842, 1/A/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_5LZF_187 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_5LZF_078 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_5LZF_081 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_5LZF_082 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_5LZF_191 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_15011.1 | |
| IL_5LZF_204 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform | homologous IL_5J7L_392 NA | |
| IL_5LZF_194 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform | homologous IL_5J7L_394 NA | |
| IL_5LZF_097 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_5LZF_098 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_5LZF_099 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.1 | |
| IL_5LZF_104 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_5LZF_106 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_5LZF_109 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | geometric IL_5J7L_351 NA | |
| IL_5LZF_111 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_5LZF_117 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_5LZF_120 | 1/a/47:52, 1/a/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_5LZF_131 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_5LZF_133 | 1/a/292:293, 1/a/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_5LZF_134 | 1/a/367:369, 1/a/392:393 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_5LZF_142 | 1/a/515:521, 1/a/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5LZF_152 | 1/a/684:688, 1/a/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_5LZF_155 | 1/a/887:894, 1/a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_5LZF_156 | 1/a/922:923, 1/a/1393:1395 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_5LZF_159 | 1/a/953:954, 1/a/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_5LZF_175 | 1/a/1399:1401, 1/a/1501:1504 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_5LZF_176 | 1/a/1401:1404, 1/a/1497:1501 | No text annotation | geometric IL_4V88_464 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5LZF_002 | Single bulged A | ||
| IL_5LZF_003 | Minor groove platform | ||
| IL_5LZF_004 | No text annotation | ||
| IL_5LZF_005 | Single stack bend | ||
| IL_5LZF_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_5LZF_007 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_5LZF_008 | No text annotation | ||
| IL_5LZF_009 | No text annotation | ||
| IL_5LZF_012 | Double sheared | ||
| IL_5LZF_013 | Isolated non-canonical cWW pair | ||
| IL_5LZF_014 | AAA cross-strand stack | ||
| IL_5LZF_017 | Single bulged A | ||
| IL_5LZF_018 | Single bulged G | ||
| IL_5LZF_019 | Triple sheared | ||
| IL_5LZF_020 | Major groove platform | ||
| IL_5LZF_022 | Single stack bend | ||
| IL_5LZF_023 | 90 degree turn | ||
| IL_5LZF_183 | No text annotation | ||
| IL_5LZF_024 | Stack outside cWW | ||
| IL_5LZF_184 | Tandem non-canonical cWW pairs | ||
| IL_5LZF_025 | No text annotation | ||
| IL_5LZF_026 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5LZF_029 | Isolated non-canonical cWW pair | ||
| IL_5LZF_030 | Double sheared with non-canonical cWW | ||
| IL_5LZF_199 | No text annotation | ||
| IL_5LZF_031 | No text annotation | ||
| IL_5LZF_033 | UAA/GAN | ||
| IL_5LZF_035 | Single bulged U | ||
| IL_5LZF_037 | No text annotation | ||
| IL_5LZF_038 | Isolated non-canonical cWW pair | ||
| IL_5LZF_039 | Tandem non-canonical cWW pairs | ||
| IL_5LZF_040 | Kink-turn | ||
| IL_5LZF_041 | No text annotation | ||
| IL_5LZF_042 | Major groove platform | ||
| IL_5LZF_043 | Isolated cWS basepair | ||
| IL_5LZF_045 | Kink-turn | ||
| IL_5LZF_200 | Single stack bend with SAM intercalation | ||
| IL_5LZF_050 | tSH-tHW-tHS | ||
| IL_5LZF_051 | No text annotation | ||
| IL_5LZF_052 | UAA/GAN | ||
| IL_5LZF_054 | tSH-tHW | ||
| IL_5LZF_055 | Single bulged U | ||
| IL_5LZF_056 | No text annotation | ||
| IL_5LZF_057 | No text annotation | ||
| IL_5LZF_059 | Single bulged A | ||
| IL_5LZF_060 | UAA/GAN variation | ||
| IL_5LZF_061 | No text annotation | ||
| IL_5LZF_062 | Isolated tWW turn | ||
| IL_5LZF_063 | Major groove platform; stack outside cWW | ||
| IL_5LZF_065 | tSH-tSH-tHH-tHS | ||
| IL_5LZF_066 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_5LZF_067 | Triple sheared | ||
| IL_5LZF_068 | Single bulged C | ||
| IL_5LZF_069 | Single bulged A | ||
| IL_5LZF_073 | Major groove minor groove platform; mini C-loop | ||
| IL_5LZF_074 | UAA/GAN related | ||
| IL_5LZF_075 | Bulged stacked bases | ||
| IL_5LZF_076 | No text annotation | ||
| IL_5LZF_077 | Major groove platform | ||
| IL_5LZF_079 | No text annotation | ||
| IL_5LZF_188 | Single bulged U | ||
| IL_5LZF_080 | No text annotation | ||
| IL_5LZF_083 | Isolated non-canonical cWW pair | ||
| IL_5LZF_084 | Isolated non-canonical cWW pair | ||
| IL_5LZF_202 | No text annotation | ||
| IL_5LZF_189 | No text annotation | ||
| IL_5LZF_085 | No text annotation | ||
| IL_5LZF_203 | No text annotation | ||
| IL_5LZF_086 | No text annotation | ||
| IL_5LZF_190 | No text annotation | ||
| IL_5LZF_087 | No text annotation | ||
| IL_5LZF_088 | No text annotation | ||
| IL_5LZF_089 | Single bulged U | ||
| IL_5LZF_090 | Double sheared | ||
| IL_5LZF_091 | No text annotation | ||
| IL_5LZF_092 | No text annotation | ||
| IL_5LZF_192 | Isolated non-canonical cWW with bulges | ||
| IL_5LZF_093 | No text annotation | ||
| IL_5LZF_193 | Major groove platform | ||
| IL_5LZF_094 | Major groove minor groove platform with extra cWW | ||
| IL_5LZF_095 | Double sheared with non-canonical cWW | ||
| IL_5LZF_096 | No text annotation | ||
| IL_5LZF_100 | No text annotation | ||
| IL_5LZF_101 | No text annotation | ||
| IL_5LZF_102 | tSH-tHS-tHW | ||
| IL_5LZF_103 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_5LZF_105 | UAA/GAN related, with intercalation | ||
| IL_5LZF_107 | UAA/GAN with extra cWW | ||
| IL_5LZF_108 | Single bulged A | ||
| IL_5LZF_110 | Major groove intercalation | ||
| IL_5LZF_112 | tHS double platform | ||
| IL_5LZF_113 | Major groove intercalation | ||
| IL_5LZF_114 | No text annotation | ||
| IL_5LZF_115 | Major groove minor groove platform; mini C-loop | ||
| IL_5LZF_116 | Symmetric double minor groove platform | ||
| IL_5LZF_118 | Single bulged G | ||
| IL_5LZF_119 | Single bulged A | ||
| IL_5LZF_121 | Minor groove platform | ||
| IL_5LZF_122 | Multiple bulged bases | ||
| IL_5LZF_123 | Minor groove platform with extra cWW | ||
| IL_5LZF_124 | Minor groove platform | ||
| IL_5LZF_125 | Single bulged G | ||
| IL_5LZF_126 | Isolated non-canonical cWW pair | ||
| IL_5LZF_127 | No text annotation | ||
| IL_5LZF_128 | Isolated cWH basepair | ||
| IL_5LZF_129 | tWH-tWH-tHW-tHW | ||
| IL_5LZF_130 | Minor groove platform | ||
| IL_5LZF_132 | No text annotation | ||
| IL_5LZF_135 | C-loop | ||
| IL_5LZF_136 | Single bulged G | ||
| IL_5LZF_195 | No text annotation | ||
| IL_5LZF_137 | No text annotation | ||
| IL_5LZF_138 | No text annotation | ||
| IL_5LZF_139 | tSH-tHW-tWW | ||
| IL_5LZF_140 | No text annotation | ||
| IL_5LZF_141 | SSU/LSU pseudoknot | ||
| IL_5LZF_143 | No text annotation | ||
| IL_5LZF_144 | tSH-tHW-tHS | ||
| IL_5LZF_145 | Major groove platform | ||
| IL_5LZF_146 | Major groove minor groove platform; mini C-loop | ||
| IL_5LZF_147 | No text annotation | ||
| IL_5LZF_148 | Major groove platform; stack outside cWW | ||
| IL_5LZF_149 | Single stack bend | ||
| IL_5LZF_150 | Tandem non-canonical cWW pairs | ||
| IL_5LZF_196 | Triple non-canonical cWW pairs | ||
| IL_5LZF_151 | No text annotation | ||
| IL_5LZF_153 | Left turn | ||
| IL_5LZF_154 | tSH-tHW-tHS | ||
| IL_5LZF_157 | Single bulged G | ||
| IL_5LZF_158 | Minor groove platform | ||
| IL_5LZF_160 | Minor groove platform | ||
| IL_5LZF_161 | Single stack bend | ||
| IL_5LZF_162 | Single bulged U | ||
| IL_5LZF_163 | Isolated non-canonical cWW pair | ||
| IL_5LZF_164 | Isolated cWS basepair | ||
| IL_5LZF_165 | Minor groove platform | ||
| IL_5LZF_166 | Single bulged A | ||
| IL_5LZF_167 | Isolated non-canonical cWW pair | ||
| IL_5LZF_168 | No text annotation | ||
| IL_5LZF_169 | Minor groove platform | ||
| IL_5LZF_170 | No text annotation | ||
| IL_5LZF_171 | No text annotation | ||
| IL_5LZF_172 | 180 degree turn | ||
| IL_5LZF_173 | Double sheared with non-canonical cWW | ||
| IL_5LZF_174 | No text annotation | ||
| IL_5LZF_197 | Isolated non-canonical cWW pair | ||
| IL_5LZF_177 | No text annotation | ||
| IL_5LZF_198 | No text annotation | ||
| IL_5LZF_178 | Isolated non-canonical cWW pair | ||
| IL_5LZF_179 | Double sheared | ||
| IL_5LZF_180 | Triple sheared related | ||
| IL_5LZF_181 | Single bulged A | ||
| IL_5LZF_182 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5LZF_027 | 1/A/30:31, 1/A/474:484, 1/A/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_5LZF_028 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_5LZF_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_5LZF_003 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_5LZF_007 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_5LZF_008 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_5LZF_031 | 1/A/2282:2284, 1/A/2384:2395, 1/A/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_5LZF_014 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_5LZF_032 | 1/a/46:52, 1/a/359:367, 1/a/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_5LZF_020 | 1/a/955:962, 1/a/973:984, 1/a/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J4_5LZF_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_5LZF_003 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_5LZF_004 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_5LZF_005 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_5LZF_008 | 1/A/1833:1835, 1/A/1905:1906, 1/A/1924:1933, 1/A/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_5LZF_010 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_5LZF_015 | 1/a/115:122, 1/a/239:240, 1/a/286:289, 1/a/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_5LZF_013 | 1/a/575:577, 1/a/764:769, 1/a/810:821, 1/a/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_5LZF_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:150, 1/A/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_5LZF_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_5LZF_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_5LZF_004 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_5LZF_005 | 1/A/2057:2064, 1/A/2446:2453, 1/A/2500:2507, 1/A/2582:2588, 1/A/2606:2611 | No text annotation | ||
| J6_5LZF_001 | 1/A/45:46, 1/A/179:183, 1/A/214:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J6_5LZF_002 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2284, 1/A/2384:2395, 1/A/2421:2435 | No text annotation | ||
| J7_5LZF_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_5LZF_002 | 1/A/817:822, 1/A/835:838, 1/A/940:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5LZF_001 | No text annotation | ||
| J3_5LZF_029 | No text annotation | ||
| J3_5LZF_004 | No text annotation | ||
| J3_5LZF_005 | No text annotation | ||
| J3_5LZF_006 | No text annotation | ||
| J3_5LZF_030 | No text annotation | ||
| J3_5LZF_009 | No text annotation | ||
| J3_5LZF_010 | No text annotation | ||
| J3_5LZF_011 | No text annotation | ||
| J3_5LZF_012 | No text annotation | ||
| J3_5LZF_013 | No text annotation | ||
| J3_5LZF_015 | No text annotation | ||
| J3_5LZF_033 | No text annotation | ||
| J3_5LZF_016 | No text annotation | ||
| J3_5LZF_017 | No text annotation | ||
| J3_5LZF_018 | No text annotation | ||
| J3_5LZF_019 | No text annotation | ||
| J3_5LZF_021 | No text annotation | ||
| J3_5LZF_034 | No text annotation | ||
| J3_5LZF_022 | No text annotation | ||
| J3_5LZF_035 | No text annotation | ||
| J3_5LZF_023 | No text annotation | ||
| J3_5LZF_036 | No text annotation | ||
| J3_5LZF_024 | No text annotation | ||
| J3_5LZF_025 | No text annotation | ||
| J3_5LZF_037 | No text annotation | ||
| J3_5LZF_026 | No text annotation | ||
| J4_5LZF_002 | No text annotation | ||
| J4_5LZF_006 | No text annotation | ||
| J4_5LZF_007 | No text annotation | ||
| J4_5LZF_009 | No text annotation | ||
| J4_5LZF_011 | No text annotation | ||
| J4_5LZF_012 | No text annotation | ||
| J4_5LZF_014 | tRNA junction | ||
| J5_5LZF_006 | No text annotation | ||
| J5_5LZF_007 | No text annotation | ||
| J5_5LZF_008 | No text annotation | ||
| J5_5LZF_009 | No text annotation | ||
| J5_5LZF_011 | No text annotation | ||
| J5_5LZF_010 | No text annotation |
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