HL_5LZF_053

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZF_053 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.2344

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5LZF|1|A|G|2303
5LZF|1|A|G|2304
5LZF|1|A|U|2305
5LZF|1|A|C|2306
5LZF|1|A|G|2307
5LZF|1|A|G|2308
5LZF|1|A|A|2309
5LZF|1|A|C|2310
5LZF|1|A|A|2311
5LZF|1|A|U|2312
5LZF|1|A|C|2313

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain y

Selenocysteine transfer RNA