HL_5LZF_060

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZF_060 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.2231

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5LZF|1|A|C|2551
5LZF|1|A|OMU|2552
5LZF|1|A|G|2553
5LZF|1|A|U|2554
5LZF|1|A|U|2555
5LZF|1|A|C|2556
5LZF|1|A|G|2557

Current chains

Chain A

23S ribosomal RNA

Nearby chains