HL_5LZF_077

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZF_077 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.2074

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LZF|1|a|A|320
5LZF|1|a|A|321
5LZF|1|a|C|322
5LZF|1|a|U|323
5LZF|1|a|G|324
5LZF|1|a|A|325
5LZF|1|a|G|326
5LZF|1|a|A|327
5LZF|1|a|C|328
5LZF|1|a|A|329
5LZF|1|a|C|330
5LZF|1|a|G|331
5LZF|1|a|G|332
5LZF|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20