HL_5LZF_081

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5LZF|1|a|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZF_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3039

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5LZF|1|a|G|462
5LZF|1|a|U|463
5LZF|1|a|U|464
5LZF|1|a|A|465
5LZF|1|a|A|466
5LZF|1|a|U|467
5LZF|1|a|A|468
5LZF|1|a|C|469
5LZF|1|a|C|470

Current chains

Chain a

16S ribosomal RNA

Nearby chains