HL_5LZF_111

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

5LZF|1|A|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5LZF_111 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.4008

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

5LZF|1|A|C|2143
5LZF|1|A|G|2144
5LZF|1|A|C|2145
5LZF|1|A|C|2146
5LZF|1|A|A|2147
5LZF|1|A|G|2148

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7